Atlas ExplorerMeasured spatial evidence

Query setup

Query mode

Dataset Species Tissue Atlas slide

Evidence filters Cell type Pathway Microenvironment

Active query evidence

Tumor-adjacent Immune-stromal Interface

Spatial tissue map

Matched Top-ranked Other spots

28 indexed spots

Continuous H&E tissue section with retrieved atlas spots

1 mm

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Retrieved spots Tumor-adjacent immune-stromal interface · GSE203612_GSM6177603

Example view

Ranked evidence cards

Top 3

1Cancer cell0.54

Atlas sourcehuman · breast

Top genesSCGB2A2, SCGB2A1, TFF3, TMSB10, EEF1A1, KRT19

2Cancer cell0.53

Atlas sourcehuman · breast

Top genesTFF3, SCGB2A2, KRT19, FTL, IGKC, SERF2

3Cancer cell0.53

Atlas sourcehuman · breast

Top genesTMSB10, IGKC, FTL, SERF2, EEF1A1, IGHG3

Retrieval-grounded analysis

User

What tissue context do these spots suggest?

HistAgent

The top-ranked spot supports a tumor-associated epithelial state with cancer-cell, immune and stromal evidence, together with antigen-presentation programs.